- An Account of the Trial of Thomas Muir, Younger of Huntershill, Before the High Court of Justiciary, at Edinburgh. On the 30th and 31st Days of August, 1793, for Seditious Practices
- The History of the High School of Glasgow: Containing the Historical Account of the Grammar School, by J. Cleland, and a Sketch of the History from 1825 to 1877, by T. Muir, Ed. by J.C. Burns
- A Treatise on the Theory of Determinants
- The trial of Thomas Muir, younger of Huntershill, before the High Court of Justiciary, at Edinburgh: on Friday, the 30th of August, 1793: on a charge of sedition. ... The second edition.
- The trial of Thomas Muir, Esq. Younger of Huntershill; before the High Court of Justiciary, upon Friday and Saturday the 30th and 31st days of August, ... On a charge of sedition. The second edition