Data Mining for Systems Biology: Methods and Protocols

Book Overview

1. Identifying Bacterial Strains from Sequencing Data

Tommi M?klin, Jukka Corander, and Antti Honkela

2. MetaVW: Large-Scale Machine Learning for Metagenomics Sequence Classification

K?vin Vervier, Pierre Mah?, and Jean-Philippe Vert

3. Online Interactive Microbial Classification and Geospatial Distributional Analysis Using BioAtlas

Jesper Lund, Qihua Tan, and Jan Baumbach

4. Generative Models for Quantification of DNA Modifications

Tarmo ?ij?, Richard Bonneau, and Harri L?hdesm?ki

5. DiMmer: Discovery of Differentially Methylated Regions in Epigenome-Wide Association Study (EWAS) Data

Tobias Frisch, Jonatan G ttcke, Richard R?ttger, Qihua Tan, and Jan Baumbach

6. Implementing a Transcription Factor Interaction Prediction System Using the GenoMetric Query Language

Stefano Perna, Arif Canakoglu, Pietro Pinoli, Stefano Ceri, and Limsoon Wong

7. Multiple Testing Tool to Detect Combinatorial Effects in Biology

Aika Terada and Koji Tsuda

8. SiBIC: A Tool for Generating a Network of Biclusters Captured by Maximal Frequent Itemset Mining

Kei-ichiro Takahashi, David A. duVerle, Sohiya Yotsukura, Ichigaku Takigawa, and Hiroshi Mamitsuka

9. Computing and Visualizing Gene Function Similarity and Coherence with NaviGO

Ziyun Ding, Qing Wei, and Daisuke Kihara

10. Analyzing Glycan Binding Profiles Using Weighted Multiple Alignment of Trees

Kiyoko F. Aoki-Kinoshita

11. Analysis of Fluxomic Experiments with Principal Metabolic Flux Mode Analysis

Sahely Bhadra and Juho Rousu

12. Analyzing Tandem Mass Spectra Using the DRIP Toolkit: Training, Searching, and Post-Processing

John T. Halloran

13. Sparse Modeling to Analyze Drug-Target Interaction Networks

Yoshihiro Yamanishi

14. DrugE-Rank: Predicting Drug-Target Interactions by Learning to Rank

Jieyao Deng, Qingjun Yuan, Hiroshi Mamitsuka, and Shanfeng Zhu

15. MeSHLabeler and DeepMeSH: Recent Progress in Large-Scale MeSH Indexing

Shengwen Peng, Hiroshi Mamitsuka, and Shanfeng Zhu

16. Disease Gene Classification with Metagraph Representations

Sezin Kircali Ata, Yuan Fang, Min Wu, Xiao-Li Li, and Xiaokui Xiao

17. Inferring Antimicrobial Resistance from Pathogen Genomes in KEGG

Minoru Kanehisa

• Format: Hardcover
• Language: English
• ISBN: 1493985604
• ISBN13: 9781493985609
• Release Date: July 2018
• Publisher: Humana
• Length: 243 Pages
• Weight: 1.46 lbs.
• Dimensions: 0.6" x 7.0" x 10.0"