- Memorial of the Sureties of Thompson J. Skinner, Late Treasurer of the Commonwealth: Together with a View of Their Case, and the Grounds on Which They Claim to Be Exonerated from Their Liability for H
- An Oration Delivered at Pittsfield on the Thirty-First Anniversary of American Independence, July 4th, 1807.
- An oration, delivered at Williamstown, on the 4th of July, 1799. Being the anniversary of American independence. By Ezekiel Bacon, Esquire. [Five lines from Thomson]
- Ægri Somnia: Recreations Of A Sick Room
- Recollections of Fifty Years Since; With Glances at the Present Aspects, and Future Portents of the Age and the Times